How to Download
FRDR offers multiple ways to download datasets. Learn more in our documentation.
An End-to-end System for Automatic Characterization of Iba1 Immunopositive Microglia in Whole Slide Imaging: Data
| Description: | This mice brain data is used in the training and testing of a fully automated software pipeline for the characterization of Immunopositive Microglia in Whole Slide Imaging for Traumatic Brain Injury. The pipeline consists of two major components: White Matter Segmentation and Microglial Analysis in Count and Morphology, both of which use supervised machine learning algorithms that were trained using the respective folders. The pipeline was also tested as a whole for its performance using the brain sections included. This data was acquired by Dr. Wellington's group at the Centre for Brain Health, University of British Columbia. For a complete description of each folder and its usage please refer to the readme document included. |
| Authors: | Kyriazis, Alexander D.; University of British Columbia Noroozizadeh, Shahriar; University of British Columbia Refaee, Amir; University of British Columbia Choi, Woongcheol; University of British Columbia Chu, Lap-Tak; University of British Columbia Bashir, Asma; University of British Columbia Cheng, Wai Hang; University of British Columbia Zhao, Rachel; University of British Columbia Namjoshi, Dhananjay R.; University of British Columbia Salcudean, Septimiu E.; University of British Columbia Wellington, Cheryl L.; University of British Columbia Nir, Guy; University of British Columbia |
| Keywords: | Computer-aided detection and diagnosis Whole slide imaging Digital pathology Classification Traumatic brain injury |
| Field of Research: | Clinical medicine > Clinical sciences > Neurology
|
| Publication Date: | 2018-10-16 |
| Publisher: | Federated Research Data Repository / dépôt fédéré de données de recherche |
| URI: | https://doi.org/10.20383/101.0120 |
Files in Dataset
No files uploaded
Download entire dataset using Globus Transfer. This method requires a Globus account and installing software. Watch Video: Get Started with FRDR: Download a Dataset
Files for this dataset are currently being backed up so it cannot be approved at this time. Please try later.
Access to this dataset is subject to the following terms:
Creative Commons Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/
Citation
Kyriazis, A., Noroozizadeh, S., Refaee, A., Choi, W., Chu, L., Bashir, A., Cheng, W., Zhao, R., Namjoshi, D., Salcudean, S., Wellington, C., Nir, G. (2018). An End-to-end System for Automatic Characterization of Iba1 Immunopositive Microglia in Whole Slide Imaging: Data. Federated Research Data Repository. https://doi.org/10.20383/101.0120
Footer Second
Footer Third
