Field
Value
Language
dc.contributor.author
Deakin, Samuel
datacite.creator.affiliationIdentifier
https://ror.org/0160cpw27;https://ror.org/03yjb2x39
en_US
datacite.creator.affiliation
University of Alberta;University of Calgary
en_US
datacite.creator.nameIdentifier
https://orcid.org/0000-0003-4227-8767
en_US
dc.contributor.author
Coltman, David
datacite.creator.affiliationIdentifier
https://ror.org/0160cpw27;https://ror.org/02grkyz14
en_US
datacite.creator.affiliation
University of Alberta;Western University
en_US
datacite.creator.nameIdentifier
https://orcid.org/0000-0002-1268-2307
en_US
dc.coverage.temporal
2019-01-01/2021-12-31
dc.date.accessioned
2024-02-07T14:58:49Z
dc.date.available
2024-02-07T14:58:49Z
dc.date.issued
2024-02-07
dc.identifier.uri
https://www.frdr-dfdr.ca/repo/dataset/756ccf4d-df0c-4b1d-a0fa-f00f5bc4f2a2
dc.identifier.uri
https://doi.org/10.20383/103.0859
dc.description
We designed a novel SNP (Single nucleotide polymorphism) genotyping assay for use with Tecan's Allegro genotyping technology (a form of single primer enrichment technology or SPET) for Rocky Mountain bighorn sheep. Our overall goal was to develop an assay which targeted 50,000 SNPs in this species but during development we designed a trial 10,000 SNP assay. We trialled both the 10,000 and 50,000 SNP assay on 40 Rocky Mountain bighorn sheep, eight individuals from two other subspecies of bighorn sheep, and eight individuals from two other species of thinhorn sheep. The Tecan library prep was performed on these samples and then sequenced on an Illumina NextSeq next generation sequencer. Data here contains raw sequencing reads for the 56 individuals genotyped using the 10,000 SNP and 50,000 SNP assays, and the VCF genotype files produced when aligning and SNP calling was performed on these reads.
en_US
dc.publisher
Federated Research Data Repository / dépôt fédéré de données de recherche
dc.rights
Creative Commons Attribution 4.0 International (CC BY 4.0)
en_US
dc.rights.uri
https://creativecommons.org/licenses/by/4.0/
en_US
dc.subject
genomics
en_US
dc.subject
sequence data
en_US
dc.subject
genetics
en_US
dc.subject
bighorn
en_US
dc.subject
sheep
en_US
dc.subject
tecan
en_US
dc.subject
allegro
en_US
dc.subject
SNP
en_US
dc.subject
Single Nucleotide Polymorphism (SNP)
en_US
dc.title
Genotype and raw sequencing data for "Development of a high-density sub-species-specific targeted SNP assay for Rocky Mountain bighorn sheep (Ovis canadensis canadensis)"
en_US
globus.shared_endpoint.name
f163c1b3-9c88-42f6-a7bb-5839ed6c4063
globus.shared_endpoint.path
/1/published/publication_854/
datacite.publicationyear
2024
datacite.resourcetype
Dataset
en_US
datacite.geolocation.geolocationPlace
Alberta;-;Alberta;Canada
datacite.geolocation.geolocationPlace
Wyoming;-;Wyoming;United States
datacite.geolocation.geolocationPlace
Montana;-;Montana;United States
datacite.fundingReference.funderIdentifier
https://ror.org/01h531d29
en_US
datacite.fundingReference.funderName
Natural Sciences and Engineering Research Council of Canada
en_US
datacite.fundingReference.awardNumber
en_US
datacite.fundingReference.awardTitle
en_US
datacite.fundingReference.funderIdentifier
https://ror.org/0160cpw27
en_US
datacite.fundingReference.funderName
University of Alberta
en_US
datacite.fundingReference.awardNumber
en_US
datacite.fundingReference.awardTitle
en_US
datacite.fundingReference.funderIdentifier
en_US
datacite.fundingReference.funderName
Canadian Mountain Network
en_US
datacite.fundingReference.awardNumber
en_US
datacite.fundingReference.awardTitle
en_US
frdr.crdc.code
RDF1060603
en_US
frdr.crdc.group_en
Biological sciences
en_US
frdr.crdc.class_en
Genetics
en_US
frdr.crdc.field_en
Conservation genetics
en_US
frdr.crdc.group_fr
Sciences biologiques
fr_CA
frdr.crdc.class_fr
Génétique
fr_CA
frdr.crdc.field_fr
Génétique de la conservation
fr_CA
