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erythroSight: Open-access image dataset of blood cells from individuals with sickle cell disease and/or beta-thalassemia or without known hemaglobinopathies, captured using automated microscope Octopi
| Description: | This dataset contains over 300,000 microscopic images of blood cells from 138 participants in Nepal and Canada, captured using automated microscope Octopi. The images (0.9 mm by 0.9 mm) were captured for research studies in Nepalgunj, Nepal and Vancouver, Canada to evaluate low-cost tools for detecting sickle cell disease and beta-thalassemia. The dataset includes raw image pairs (left and right half illuminated images), processed images (differential phase contrast images), cell segmentation outlines, and morphological characterization of cells. The majority of images are captured 2 hours after sample preparation of the sickling test at room temperature, while other configurations (such as other time instances, different temperature settings, time series data) are also included. |
| Authors: | Shrestha, Pranav; University of British Columbia;  0000-0003-2533-2776Li, Hongquan; Stanford University; 0000-0002-3668-5772Prakash, Manu; Stanford University; 0000-0002-8046-8388Merkeley, Hayley; University of British Columbia; 0009-0006-1964-7746Kapoor, Videsh; University of British Columbia; 0000-0002-1040-3394Pande, Rajan; Bheri Hospital; 0000-0001-9328-5145Stoeber, Boris; University of British Columbia; 0000-0003-0230-238X |
| Keywords: | Red blood cells Erythrocyte Microscopy Sickle cell disease Sickle cell trait Beta-thalassemia Octopi Automated microscope Hematology Hematopathology Biomedical imaging β-thalassemia |
| Field of Research: | Medical and biomedical engineering > Medical and biomedical engineering > Medical and biomedical engineering, not elsewhere classified
Clinical medicine > Cardiorespiratory medicine and hematology > Hematology
Medical biotechnology > Medical biotechnology > Medical biotechnology diagnostics (including biosensors)
Mechanical engineering > Other mechanical engineering > Other mechanical engineering, not elsewhere classified
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| Publication Date: | 2024-09-18 |
| Publisher: | Federated Research Data Repository / dépôt fédéré de données de recherche |
| Funder: | University of British Columbia; AWD-017004 University of British Columbia; AWD-023617 VPHEALTH 2023 Canada Research Chairs; CRC-2017-00041 |
| URI: | https://doi.org/10.20383/103.0916 |
| Related Identifiers: |
This dataset is a supplement to
This dataset is a supplement to
This dataset is a supplement to
This dataset is supplemented by
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| Geographic Coverage: | Place Name Mount Sagarmatha Polyclinic and Diagnostic Center City Nepalgunj Province / Territory / State Bheri Zone/ Province no-5 Country Nepal Place Name BC Children's Hospital City Vancouver Province / Province / Territory British Columbia Territory Country Canada Place Name St. Paul's Hospital City Vancouver Province / Province / Territory British Columbia Territory Country Canada |
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Access to this dataset is subject to the following terms:
Creative Commons Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/
Citation
Shrestha, P., Li, H., Prakash, M., Merkeley, H., Kapoor, V., Pande, R., Stoeber, B. (2024). erythroSight: Open-access image dataset of blood cells from individuals with sickle cell disease and/or beta-thalassemia or without known hemaglobinopathies, captured using automated microscope Octopi. Federated Research Data Repository. https://doi.org/10.20383/103.0916
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