Notice
This is not the latest version of this dataset. The latest version can be found at:0ed1c26c-127e-481e-b113-f75253efe976
How to Download
FRDR offers multiple ways to download datasets. Learn more in our documentation.
Real-Time Closed-Loop Feedback System For Mouse Mesoscale Cortical Signal And Movement Control: CLoPy
Description: | This dataset includes raw wide-field GCaMP6s image stacks of dorsal cortical activity in mice while they are being trained in 1) A closed-loop neurofeedback task (CLNF) and 2) A closed-loop movement feedback task (CLMF). Data for CLMF experiments are accompanied by synchronized behavior recordings of the whole body of the mouse. Most experiments were performed toward the end of the mouse light cycle(5 PM - 8 PM). CLNF cortical image stacks were collected using Raspberry Pi camera v1 while CLMF cortical image stacks were recorded using a pair of front-to-front video lenses coupled to a CCD camera (Pantera Dalsa). Calcium indicators were excited with blue-light-emitting diodes (470 nm) with bandpass filters (467–499 nm). Emission fluorescence was filtered using a 510–550 nm bandpass filter. The recorded behavior scene was illuminated with infrared light. This is the data repository for titled publication "Real-Time Closed-Loop Feedback System For Mouse Mesoscale Cortical Signal And Movement Control: CLoPy". |
Authors: | Kumar Pankaj, Gupta; University of British Columbia Murphy, Timothy H.; University of British Columbia |
Keywords: | real-time closed-loop neurofeedback movement feedback widefield calcium imaging GCAMP mouse behavior behavior neuroscience cortical activity behavior learning |
Field of Research: | Biological sciences > Neurosciences, biological and chemical aspects > Behavioural neuroscience of learning and memory
|
Publication Date: | 2024-11-01 |
Publisher: | Federated Research Data Repository / dépôt fédéré de données de recherche |
URI: | https://doi.org/10.20383/102.0400 |
Appears in Collections: | UBC Brain Circuits |
Files in Dataset
No files uploaded
Download entire dataset using Globus Transfer. This method requires a Globus account and installing software. Watch Video: Get Started with FRDR: Download a Dataset
Files for this dataset are currently being backed up so it cannot be approved at this time. Please try later.
Access to this dataset is subject to the following terms:
Creative Commons Attribution-NonCommercial 4.0 (CC BY-NC 4.0) https://creativecommons.org/licenses/by-nc/4.0/
Citation
Kumar Pankaj, G., Murphy, T. (2024). Real-Time Closed-Loop Feedback System For Mouse Mesoscale Cortical Signal And Movement Control: CLoPy. Federated Research Data Repository. https://doi.org/10.20383/102.0400
Version History
Version | Date | Summary |
---|---|---|
Version 2 | 2024-11-29 | Added processed data to recreate figures in the paper. Associated code using this processed data is here- https://github.com/pankajkgupta/clopy Also including the DeepLabCut-Live model that was used for real-time pose tracking in CLMF experiments. |
Version 1 | 2024-11-01 |